1. Paramount Fanfare*/Main Title
2. The Girl on the Flying Trapeze
Performed by Pee-wee Herman
3. Pee-wee Flies/Happy House/Pee-wee Herman Had a Farm "Old MacDonald Had a Farm" - Traditional, arr. Steve Bartek Performed by Pee-wee Herman and Vance the Pig
4. Rise 'n Shine**
5. The Greenhouse/Date Book #1, 2 & 3* [contains material not used in film]
6. Sneaky Walk/Race to School
7. Paparazzi* [unused]/Winnie's Hair*/Mud* [unused]/Race to the Store*
8. The Big Storm
9. After the Storm*/Pee-wee to the Rescue/Lion Problems
10. Where's Midge?/Lion Tag*
11. Circus Parade
12. Sad Drive Home
13. Circus in the House
14. Zsa Zsa*/Happy Circus
15. Zsa Zsa's Delight/Pee-wee's Inspiration*/Hot Dog Tree* [unused]/Mace's Inspiration*/Pee-wee's Flower*
16. Elephant Ride 17. Idyll*
18. Clouds* [contains material not used in film]
19. The Big Kiss* (film version) [contains material not used in film]
20. Rejection
21. Mace's Speech/Busy Circus*/Square Dance*
22. Man to Man/Psycho Winnie
23. Winnie and the Italians*
24. Rimprovero
Performed by Pee-wee Herman Traditional, arr. Steve Bartek
25. I Llove You
26. Pee-wee Tries/Elephant*/Pee-wee Tries Again/Town Spies
27. The Side Show
28. Pee-wee's Love Theme
29. Shrinking Weenies*/Big Top*
30. Angry Mob/The Show's Off*/Idea*
31. Transformation
32. Big Top Finale
Performed by Pee-wee Herman and The Big Top Company Lyrics by Paul Reubens, George McGrath and Randal Kleiser
33. Pee-wee's Big Surprise
includes "Tequila" by Chuck Rio; published by Careers BMG Music
Publishing, Inc. (BMI) / EMI Longitude Music Co. (BMI)
34.End Credits
BONUS TRACKS
35. Idyll (alternate)
36. The Big Kiss (album version)
37. Big Top Finale (instrumental)
38. Pee-wee's Big Surprise (alternate)
39. The Girl on the Flying Trapeze (instrumental)

* previously unreleased
** contains previously unreleased material